Framework
Deploy OpenMS as web apps.
Web interface template for OpenMS pipelines. Deploy custom analysis tools as interactive web apps without frontend development—built on Streamlit with workspace management, parameter widgets, and parallel TOPP execution.
Overview
From pipeline to browser
OpenMS WebApps provides an opinionated template for wrapping pyOpenMS and TOPP workflows in a user-friendly interface. Scientists can test workflows online or download packaged builds for local deployment.
Template
streamlit-template
Fork and customize the base app for your OpenMS workflow.
View on GitHub
Deploy
streamlit-deployment
Host multiple WebApps together with Docker Compose.
Deployment guide
Examples
Featured apps
Community apps built on the OpenMS WebApps framework.
Browse applications
Publication
Journal of Proteome Research (2025)
OpenMS WebApps: Building User-Friendly Solutions for MS Analysis.
Read the paper